Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARMC3_chr10_22923053_23043523	0/0	t0005	1099	4	4	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	t0006	1099	2	2	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	t0007	1099	1	0	0	1	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC5_chr16_31454501_31472165	1/1	t0001	301	408	95	59	185	17	50	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	t0002	306	4	0	3	0	1	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	t0003	301	3	3	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	t0004	301	3	0	0	3	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC6_chr19_19028603_19063176	1/0	t0001	956	287	73	44	128	11	30	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	t0002	956	14	2	5	0	3	4	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	t0003	956	9	9	0	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/1	t0004	956	4	0	3	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	t0005	956	4	2	0	0	0	2	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	t0006	956	2	2	0	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	t0007	956	1	1	0	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	t0008	956	1	1	0	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC7_chr17_75104969_75135272	1/0	t0001	1555	254	71	46	110	7	19	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/1	t0002	1555	110	7	21	46	6	29	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0003	1555	6	0	4	0	2	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0004	1555	6	6	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0005	1555	3	0	3	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0006	1555	3	1	2	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0007	1555	3	3	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0008	1555	2	0	1	0	1	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0009	1555	2	1	1	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0010	1555	2	0	0	2	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0011	1555	2	2	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0012	1555	1	1	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0013	1555	1	1	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0014	1555	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0015	1555	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0016	1555	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0017	1555	1	1	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0018	1555	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0019	1555	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	t0020	1555	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC8_chr3_138182301_138303373	1/1	t0001	2736	208	70	40	63	10	23	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0002	2736	22	6	7	2	0	7	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0003	2737	8	6	2	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0004	2736	2	0	0	2	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0005	2737	1	1	0	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0006	2737	1	1	0	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0007	2736	1	0	0	1	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0008	2736	1	1	0	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0009	2736	1	1	0	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	t0010	2736	1	0	1	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC9_chr2_231193631_231381848	0/0	t0001	5416	32	0	7	16	2	7	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0002	5409	23	0	3	14	1	5	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0003	5411	10	1	3	5	0	1	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0004	5423	9	0	1	8	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0005	5425	8	0	0	8	0	0	copy fasta	ARMC9	chr2	231193631	231381848