JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NMU_chr4_55590231_55641298	1/1	t0001	292	411	100	73	176	18	42	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	t0002	292	1	0	1	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NNAT_chr20_37516250_37528690	1/1	t0001	1014	397	95	82	174	8	36	copy fasta	NNAT	chr20	37516250	37528690
NNAT_chr20_37516250_37528690	0/0	t0002	1012	9	0	0	9	0	0	copy fasta	NNAT	chr20	37516250	37528690
NNAT_chr20_37516250_37528690	0/0	t0003	1014	1	1	0	0	0	0	copy fasta	NNAT	chr20	37516250	37528690
NNAT_chr20_37516250_37528690	0/0	t0004	1014	1	0	0	1	0	0	copy fasta	NNAT	chr20	37516250	37528690
NNMT_chr11_114291399_114318536	1/1	t0001	1218	317	56	52	151	9	47	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0002	1218	42	10	9	21	0	2	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0003	1218	36	12	10	12	1	1	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0004	1218	19	16	3	0	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0005	1218	5	5	0	0	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0006	1218	2	0	0	2	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0007	1218	1	1	0	0	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0008	1218	1	0	0	1	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	t0009	1218	1	0	0	1	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNT_chr5_43598180_43712396	1/1	t0001	3161	71	34	8	21	0	6	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0002	3167	19	0	3	12	0	4	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0003	3161	18	1	7	4	0	6	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0004	3166	15	11	1	0	0	3	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0005	3161	14	5	2	3	0	4	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0006	3166	9	5	3	0	0	1	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0007	3167	5	4	1	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0008	3161	5	0	2	0	1	2	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0009	3162	4	0	1	0	0	3	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0010	3166	4	4	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0011	3167	2	0	0	2	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0012	3167	2	0	0	2	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0013	3169	2	0	0	2	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0014	3166	2	2	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0015	3163	2	1	0	0	0	1	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0016	3166	2	1	1	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0017	3161	1	0	1	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0018	3167	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0019	3163	1	0	0	1	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0020	3160	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0021	3160	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0022	3160	1	0	0	1	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0023	3166	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0024	3161	1	0	0	0	1	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0025	3165	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0026	3167	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0027	3161	1	0	1	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	t0028	3163	1	0	1	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NOA1_chr4_56958350_56982606	1/1	t0001	122	410	92	78	178	14	46	copy fasta	NOA1	chr4	56958350	56982606
NOB1_chr16_69736871_69759926	0/1	t0001	478	441	88	73	218	15	46	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	t0002	478	2	2	0	0	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	t0003	478	1	1	0	0	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	t0004	478	1	0	0	0	1	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	t0005	478	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	t0006	478	1	0	1	0	0	0	copy fasta	NOB1	chr16	69736871	69759926