JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOB1_chr16_69736871_69759926	0/0	t0007	478	1	1	0	0	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	t0008	478	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOC2L_chr1_939203_964256	0/1	t0001	508	318	68	64	126	16	43	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0002	502	53	5	9	38	0	1	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	1/0	t0003	508	28	10	6	8	0	3	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0004	508	12	9	3	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0005	508	3	0	2	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0006	508	2	2	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0007	508	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0008	508	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0009	508	1	1	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0010	508	1	1	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0011	508	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	t0012	508	1	0	0	0	0	1	copy fasta	NOC2L	chr1	939203	964256
NOC3L_chr10_94328226_94367939	1/1	t0001	1053	247	42	36	131	12	24	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0002	1054	45	0	7	34	2	2	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0003	1053	28	11	7	0	2	8	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0004	1053	22	20	1	0	0	1	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0005	1053	18	4	3	4	2	5	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0006	1053	11	10	0	1	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0007	1053	5	5	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0008	1053	3	2	1	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	t0009	1053	1	0	1	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC4L_chr12_132139457_132157468	1/1	t0001	100	291	81	57	112	10	29	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	t0002	100	1	0	1	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	t0003	100	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	t0004	100	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOCT_chr4_139010781_139050939	0/0	t0001	670	95	7	20	53	1	14	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/1	t0002	669	63	20	7	27	3	5	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0003	671	56	5	17	23	4	7	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0004	668	28	22	2	3	1	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0005	669	26	9	7	3	5	2	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0006	670	20	1	2	12	2	3	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0007	669	19	3	0	16	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	1/0	t0008	667	16	8	0	7	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0009	672	16	1	3	5	0	7	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0010	669	9	3	6	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0011	667	7	1	3	2	0	1	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0012	668	5	4	0	0	0	1	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0013	671	4	0	1	1	0	2	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0014	670	3	3	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0015	668	3	0	0	3	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0016	668	2	1	1	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0017	670	2	0	1	1	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0018	670	2	1	0	1	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0019	667	1	1	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0020	670	1	1	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0021	671	1	0	0	1	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0022	669	1	0	0	1	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0023	669	1	1	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939