JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOCT_chr4_139010781_139050939	0/0	t0024	669	1	1	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0025	671	1	0	0	1	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	t0026	670	1	1	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOD1_chr7_30419527_30483784	1/1	t0001	1642	149	11	27	80	9	20	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0002	1642	114	16	18	62	3	15	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0003	1642	16	11	2	3	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0004	1642	13	11	2	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0005	1643	9	7	2	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0006	1642	6	6	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0007	1642	5	4	1	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0008	1642	5	5	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0009	1642	4	4	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0010	1642	4	4	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0011	1642	4	0	0	4	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0012	1640	4	0	1	0	0	3	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0013	1642	3	0	0	0	0	3	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0014	1642	3	3	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0015	1642	3	3	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0016	1642	2	1	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0017	1643	2	2	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0018	1642	2	0	0	2	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0019	1642	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0020	1643	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0021	1642	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0022	1642	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0023	1642	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0024	1642	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0025	1642	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0026	1642	1	0	0	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0027	1642	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	t0028	1642	1	0	1	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD2_chr16_50688606_50738075	1/1	t0001	1322	168	32	46	63	7	18	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0002	1322	127	54	22	34	11	6	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0003	1322	6	6	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0004	1322	3	3	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0005	1322	3	0	2	0	0	1	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0006	1322	1	1	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0007	1300	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0008	1322	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0009	1322	1	0	0	0	0	1	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	t0010	1322	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NODAL_chr10_70426936_70446681	1/0	t0001	1015	211	68	45	70	7	20	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/1	t0002	1015	194	25	35	104	6	23	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	t0003	1015	24	2	0	22	0	0	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	t0004	1015	2	0	2	0	0	0	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	t0005	1015	1	0	0	0	0	1	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	t0006	1015	1	0	0	0	1	0	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	t0007	1015	1	1	0	0	0	0	copy fasta	NODAL	chr10	70426936	70446681
NOG_chr17_56588699_56600611	0/0	t0001	1213	162	25	33	74	9	21	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/1	t0002	1214	113	28	22	45	4	13	copy fasta	NOG	chr17	56588699	56600611