JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOG_chr17_56588699_56600611	1/0	t0003	1215	29	5	7	11	1	4	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0004	1212	10	3	2	5	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0005	1215	8	4	0	4	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0006	1219	5	4	1	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0007	1220	5	4	1	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0008	1214	4	4	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0009	1215	2	2	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0010	1219	2	2	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0011	1220	2	2	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0012	1215	1	0	0	1	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0013	1215	1	0	1	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0014	1212	1	0	0	1	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0015	1213	1	0	1	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0016	1214	1	0	1	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0017	1213	1	0	0	1	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0018	1211	1	1	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0019	1213	1	0	0	1	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0020	1214	1	0	0	1	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0021	1215	1	0	0	0	0	1	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0022	1214	1	1	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0023	1216	1	0	0	0	0	1	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0024	1220	1	1	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	t0025	1214	1	0	1	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOL10_chr2_10565754_10694975	0/1	t0001	1432	183	41	33	75	5	28	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0002	1434	110	37	16	51	2	4	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0003	1432	45	1	13	24	2	5	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0004	1432	7	1	6	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0005	1434	6	5	1	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0006	1434	4	0	0	4	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0007	1432	2	0	0	0	0	2	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0008	1433	2	0	2	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0009	1432	2	0	0	2	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0010	1434	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0011	1435	1	1	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0012	1434	1	0	1	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0013	1434	1	0	1	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0014	1433	1	0	1	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	1/0	t0015	1432	1	0	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0016	1432	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0017	1432	1	0	0	0	1	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0018	1435	1	1	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0019	1432	1	0	0	0	0	1	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	t0020	1432	1	1	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL11_chr17_67712936_67749531	0/1	t0001	685	314	50	53	168	10	32	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	1/0	t0002	685	49	25	14	3	0	6	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	t0003	685	15	14	1	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	t0004	685	6	0	0	6	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	t0005	685	3	3	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	t0006	685	2	0	0	2	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	t0007	685	2	0	0	2	0	0	copy fasta	NOL11	chr17	67712936	67749531