JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOL11_chr17_67712936_67749531	0/0	t0008	685	1	1	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	t0009	685	1	0	0	1	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	t0010	685	1	1	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL12_chr22_37681343_37698474	1/0	t0001	2189	236	38	38	129	10	20	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/1	t0002	2187	138	33	22	60	6	16	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0003	2187	7	5	2	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0004	2207	6	6	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0005	2189	5	0	0	5	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0006	2187	5	0	4	0	0	1	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0007	2187	3	0	0	0	0	3	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0008	2189	2	2	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0009	2187	2	2	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0010	2187	2	2	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0011	2187	2	2	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0012	2187	2	2	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0013	2187	1	0	1	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0014	2189	1	0	0	1	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0015	2189	1	1	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0016	2189	1	0	0	1	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0017	2189	1	0	0	1	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0018	2187	1	0	0	1	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0019	2187	1	1	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0020	2187	1	1	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0021	2187	1	0	0	0	0	1	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0022	2187	1	0	0	0	0	1	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0023	2187	1	1	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0024	2187	1	0	1	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0025	2187	1	0	1	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	t0026	2187	1	0	1	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL3_chr16_67165538_67180737	1/1	t0001	729	217	36	54	88	9	28	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	t0002	729	66	54	4	5	0	3	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	t0003	729	11	3	1	0	1	6	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	t0004	729	1	1	0	0	0	0	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	t0005	729	1	0	0	1	0	0	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	t0006	729	1	0	0	0	0	1	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	t0007	729	1	0	1	0	0	0	copy fasta	NOL3	chr16	67165538	67180737
NOL4L_chr20_32438059_32590333	0/1	t0001	4993	44	11	13	13	2	4	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	1/0	t0002	4981	30	9	10	0	2	8	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0003	4985	22	13	5	3	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0004	4986	12	5	3	4	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0005	4994	9	1	2	2	0	4	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0006	4994	8	8	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0007	4982	5	2	2	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0008	4994	5	4	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0009	4991	4	4	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0010	4986	4	0	4	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0011	4988	3	0	2	1	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0012	4992	3	2	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0013	4993	3	2	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0014	4987	3	1	2	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333