JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOL4L_chr20_32438059_32590333	0/0	t0015	4992	3	0	0	1	1	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0016	4984	2	1	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0017	4986	2	2	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0018	4986	2	0	0	2	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0019	4996	2	0	0	0	0	2	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0020	4984	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0021	4984	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0022	4981	1	0	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0023	4985	1	0	0	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0024	4985	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0025	4984	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0026	4982	1	0	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0027	4982	1	0	0	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0028	4991	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0029	4985	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0030	4985	1	0	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0031	4984	1	0	0	0	1	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0032	4987	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0033	4987	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0034	4993	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0035	4998	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0036	4987	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0037	4988	1	0	0	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0038	4989	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0039	4994	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0040	4995	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0041	4993	1	0	0	1	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0042	4993	1	0	0	1	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0043	4989	1	0	0	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0044	4993	1	0	0	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0045	4990	1	0	0	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0046	4993	1	0	0	0	0	1	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0047	4993	1	0	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0048	4990	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	t0049	4994	1	0	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4_chr18_33846100_34229913	1/1	t0001	3403	129	34	20	59	4	10	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0002	3405	13	5	3	0	2	3	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0003	3404	10	9	1	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0004	3403	4	2	0	0	2	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0005	3403	3	3	0	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0006	3403	1	0	0	0	0	1	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0007	3404	1	1	0	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0008	3403	1	0	1	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0009	3403	1	0	0	1	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0010	3403	1	0	0	1	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0011	3403	1	0	1	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0012	3403	1	0	0	1	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0013	3405	1	0	1	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	t0014	3403	1	0	1	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL6_chr9_33456353_33478924	0/1	t0001	1394	133	16	34	64	6	12	copy fasta	NOL6	chr9	33456353	33478924