JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOL6_chr9_33456353_33478924	1/0	t0002	1394	103	21	15	52	4	10	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0003	1394	79	4	9	48	5	13	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0004	1394	43	0	10	24	2	7	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0005	1394	11	11	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0006	1394	10	9	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0007	1394	8	8	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0008	1386	6	6	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0009	1394	6	0	0	6	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0010	1394	6	0	6	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0011	1394	5	4	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0012	1394	4	4	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0013	1394	4	0	0	3	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0014	1394	3	0	0	1	0	2	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0015	1394	3	0	2	0	1	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0016	1394	3	2	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0017	1394	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0018	1394	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0019	1394	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0020	1394	1	0	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0021	1394	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0022	1394	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0023	1394	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0024	1394	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0025	1376	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0026	1394	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	t0027	1394	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL7_chr6_13610335_13626712	1/1	t0001	910	423	73	81	209	16	42	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	t0002	914	14	11	3	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	t0003	911	9	9	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	t0004	897	2	2	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	t0005	910	1	0	0	1	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	t0006	910	1	1	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	t0007	914	1	1	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	t0008	910	1	1	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL8_chr9_92292358_92330350	0/0	t0001	572	149	75	17	38	7	12	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	t0002	572	128	14	29	63	6	16	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	1/1	t0003	572	104	1	23	64	4	10	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	t0004	572	23	1	4	13	1	4	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	t0005	572	2	2	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	t0006	572	1	0	1	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	t0007	572	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL9_chr1_6516347_6559513	0/1	t0001	4524	121	17	31	47	5	20	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0002	4526	35	4	5	18	2	6	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0003	4524	28	0	0	28	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0004	4525	17	2	6	9	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0005	4524	10	1	4	1	3	1	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0006	4524	9	7	2	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0007	4526	7	7	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0008	4525	6	6	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0009	4527	6	2	0	4	0	0	copy fasta	NOL9	chr1	6516347	6559513