JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NOL9_chr1_6516347_6559513	0/0	t0010	4528	6	6	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0011	4524	5	5	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0012	4527	4	1	1	1	1	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	1/0	t0013	4519	4	3	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0014	4523	3	0	2	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0015	4524	3	0	3	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0016	4525	3	1	1	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0017	4520	3	3	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0018	4526	3	3	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0019	4524	2	0	0	2	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0020	4528	2	2	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0021	4528	2	2	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0022	4527	2	1	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0023	4524	2	0	2	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0024	4521	2	0	0	2	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0025	4528	2	0	0	2	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0026	4527	2	2	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0027	4526	2	2	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0028	4528	2	2	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0029	4525	1	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0030	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0031	4525	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0032	4522	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0033	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0034	4524	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0035	4523	1	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0036	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0037	4522	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0038	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0039	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0040	4525	1	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0041	4525	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0042	4525	1	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0043	4526	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0044	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0045	4525	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0046	4525	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0047	4522	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0048	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0049	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0050	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0051	4522	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0052	4527	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0053	4524	1	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0054	4525	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0055	4526	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0056	4527	1	0	0	0	1	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0057	4527	1	0	0	0	1	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0058	4527	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0059	4524	1	0	0	1	0	copy fasta	NOL9	chr1	6516347	6559513