JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOL9_chr1_6516347_6559513	0/0	t0060	4526	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0061	4526	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0062	4526	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0063	4529	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0064	4527	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0065	4527	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0066	4523	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0067	4523	1	0	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0068	4525	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0069	4526	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0070	4527	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0071	4526	1	0	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0072	4525	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0073	4525	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0074	4522	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	t0075	4528	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOLC1_chr10_102147389_102168870	0/0	t0001	1624	204	32	30	122	4	16	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	1/1	t0002	1624	149	23	36	56	10	22	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0003	1624	18	17	1	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0004	1624	12	8	4	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0005	1624	8	0	0	8	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0006	1624	4	4	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0007	1624	2	2	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0008	1624	2	2	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0009	1624	1	1	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0010	1624	1	0	1	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0011	1624	1	0	0	1	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0012	1624	1	0	0	0	0	1	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0013	1624	1	0	0	0	1	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0014	1624	1	0	0	0	0	1	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0015	1624	1	1	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0016	1624	1	0	0	1	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	t0017	1624	1	0	0	0	1	0	copy fasta	NOLC1	chr10	102147389	102168870
NOM1_chr7_156944712_156978176	0/1	t0001	3502	102	16	30	40	3	12	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0002	3500	82	6	15	54	2	5	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	1/0	t0003	3500	77	14	7	40	1	14	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0004	3502	37	17	6	6	6	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0005	3500	34	0	0	33	0	1	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0006	3500	16	5	2	7	1	1	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0007	3501	8	7	0	0	0	1	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0008	3501	7	0	3	0	0	4	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0009	3502	6	6	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0010	3501	5	0	0	1	2	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0011	3500	5	5	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0012	3503	5	2	1	2	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0013	3500	4	4	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0014	3491	4	0	3	0	1	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0015	3500	3	3	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0016	3502	3	0	0	3	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0017	3500	2	2	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176