JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOM1_chr7_156944712_156978176	0/0	t0018	3500	2	0	2	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0019	3499	2	0	0	1	0	1	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0020	3502	2	0	0	0	0	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0021	3502	2	0	0	2	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0022	3501	2	2	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0023	3501	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0024	3501	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0025	3500	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0026	3500	1	0	1	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0027	3500	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0028	3500	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0029	3500	1	0	0	0	1	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0030	3500	1	0	1	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0031	3503	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0032	3502	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0033	3502	1	0	0	0	1	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0034	3504	1	0	1	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0035	3503	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0036	3503	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0037	3502	1	0	0	0	0	1	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	t0038	3502	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOMO1_chr16_14828721_14901157	0/0	t0001	644	252	37	57	118	5	35	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/1	t0002	644	68	23	3	30	3	8	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	t0003	645	7	2	0	5	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	t0004	644	3	3	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	t0005	644	3	0	0	1	0	2	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	t0006	645	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	t0007	644	1	0	1	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	t0008	644	1	0	0	0	0	1	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	t0009	644	1	0	1	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO2_chr16_18494927_18567097	0/0	t0001	567	14	1	2	1	0	10	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	t0002	567	1	1	0	0	0	0	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	t0003	567	1	0	0	1	0	0	copy fasta	NOMO2	chr16	18494927	18567097
NOMO3_chr16_16227528_16299811	0/0	t0001	652	100	16	35	28	6	15	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	t0002	652	28	7	9	7	2	3	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	t0003	652	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	t0004	652	1	0	0	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	t0005	652	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	t0006	652	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NONO_chrX_71278635_71306168	1/1	t0001	1246	133	51	21	39	7	13	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0002	1247	45	4	13	19	0	9	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0003	1246	37	0	5	26	0	6	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0004	1247	3	0	3	0	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0005	1246	2	0	1	1	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0006	1247	2	0	0	2	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0007	1248	2	0	0	2	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0008	1245	1	0	0	1	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0009	1246	1	0	0	1	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0010	1246	1	0	0	1	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	t0011	1247	1	0	0	1	0	0	copy fasta	NONO	chrX	71278635	71306168