JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NONO_chrX_71278635_71306168	0/0	t0012	1247	1	1	0	0	0	0	copy fasta	NONO	chrX	71278635	71306168
NOP10_chr15_34336719_34348136	1/0	t0001	313	320	81	66	127	11	34	copy fasta	NOP10	chr15	34336719	34348136
NOP10_chr15_34336719_34348136	0/0	t0002	313	113	14	8	81	3	7	copy fasta	NOP10	chr15	34336719	34348136
NOP10_chr15_34336719_34348136	0/0	t0003	313	10	1	3	0	2	4	copy fasta	NOP10	chr15	34336719	34348136
NOP10_chr15_34336719_34348136	0/0	t0004	313	2	2	0	0	0	0	copy fasta	NOP10	chr15	34336719	34348136
NOP10_chr15_34336719_34348136	0/0	t0005	313	2	0	1	0	0	1	copy fasta	NOP10	chr15	34336719	34348136
NOP10_chr15_34336719_34348136	0/0	t0006	313	1	0	0	1	0	0	copy fasta	NOP10	chr15	34336719	34348136
NOP10_chr15_34336719_34348136	0/0	t0007	313	1	0	0	1	0	0	copy fasta	NOP10	chr15	34336719	34348136
NOP14_chr4_2932936_2968406	1/1	t0001	983	321	60	55	160	12	32	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0002	983	42	0	16	8	5	13	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0003	983	11	8	1	0	0	2	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0004	983	8	7	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0005	983	6	0	2	4	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0006	983	4	4	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0007	983	3	3	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0008	983	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0009	983	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0010	983	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0011	983	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0012	983	2	0	1	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0013	983	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0014	983	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0015	983	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0016	983	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0017	983	1	0	0	0	1	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0018	983	1	0	0	1	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0019	983	1	0	0	1	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0020	983	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0021	983	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0022	983	1	0	0	1	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0023	983	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0024	983	1	0	0	1	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0025	983	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0026	983	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0027	983	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	t0028	983	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP16_chr5_176378946_176393598	1/1	t0001	345	309	57	56	143	14	37	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	t0002	345	72	17	8	42	2	3	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	t0003	343	28	9	5	13	0	1	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	t0004	345	19	13	3	0	2	1	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	t0005	345	2	0	2	0	0	0	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	t0006	345	2	2	0	0	0	0	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	t0007	345	1	0	0	0	0	1	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	t0008	345	1	0	0	0	0	1	copy fasta	NOP16	chr5	176378946	176393598
NOP2_chr12_6551871_6573291	1/1	t0001	212	417	90	73	191	16	45	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	t0002	212	6	4	1	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	t0003	212	1	0	0	0	0	1	copy fasta	NOP2	chr12	6551871	6573291
NOP53_chr19_47740546_47762058	1/1	t0001	68	392	98	65	170	13	44	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	t0002	69	8	0	3	0	3	2	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	t0003	68	4	0	4	0	0	0	copy fasta	NOP53	chr19	47740546	47762058