JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOP56_chr20_2647632_2663393	1/1	t0001	129	377	92	67	164	14	38	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	t0002	129	68	0	16	42	3	7	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	t0003	129	3	0	1	0	1	1	copy fasta	NOP56	chr20	2647632	2663393
NOP58_chr2_202260763_202308661	1/0	t0001	405	237	74	46	86	8	22	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	t0002	405	45	1	10	20	2	12	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/1	t0003	405	22	4	13	1	2	1	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	t0004	405	2	0	1	0	0	1	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	t0005	405	1	0	0	1	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	t0006	405	1	1	0	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP9_chr14_24294850_24314124	0/0	t0001	4135	136	35	28	46	6	21	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/1	t0002	4135	112	6	9	79	3	14	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0003	4135	43	13	21	0	4	5	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	1/0	t0004	4135	34	10	2	21	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0005	4135	13	0	3	8	0	2	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0006	4135	9	9	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0007	4133	8	0	0	8	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0008	4135	6	0	1	5	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0009	4135	5	5	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0010	4135	5	0	0	5	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0011	4135	5	0	3	0	1	1	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0012	4135	4	4	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0013	4135	3	0	3	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0014	4133	3	3	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0015	4135	2	2	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0016	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0017	4135	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0018	4135	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0019	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0020	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0021	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0022	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0023	4135	1	0	0	0	1	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0024	4135	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0025	4105	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0026	4135	1	0	0	0	0	1	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0027	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0028	4135	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0029	4135	1	0	0	0	0	1	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0030	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0031	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0032	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0033	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0034	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0035	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0036	4135	1	0	0	0	0	1	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0037	4135	1	0	0	0	1	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0038	4135	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0039	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0040	4135	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	t0041	4135	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124