JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOPCHAP1_chr12_104981316_105022625	0/0	t0001	22967	53	11	6	32	0	4	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/1	t0002	22968	36	1	6	18	0	10	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0003	22969	32	0	7	21	0	4	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0004	22967	20	6	2	12	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0005	22971	13	12	1	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0006	22968	12	5	4	0	1	2	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0007	22970	11	0	0	11	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0008	22967	10	0	0	10	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0009	22968	9	0	0	9	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0010	22967	7	0	0	7	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0011	22970	5	0	0	5	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0012	22965	5	5	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0013	22969	5	4	0	0	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0014	22970	5	0	0	5	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0015	22968	5	0	0	5	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0016	22968	5	1	3	0	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0017	22970	4	0	2	0	2	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0018	22968	4	0	0	0	4	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0019	22968	4	0	4	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0020	22967	3	0	0	3	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0021	22969	3	0	0	0	0	3	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0022	22968	3	0	0	3	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0023	22968	3	0	0	0	0	3	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0024	22968	3	3	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0025	22968	3	1	1	0	1	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0026	22968	3	0	3	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	1/0	t0027	22967	3	0	1	0	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0028	22969	3	0	2	0	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0029	22969	3	1	0	1	1	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0030	22970	2	0	0	2	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0031	22965	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0032	22967	2	0	0	2	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0033	22971	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0034	22971	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0035	22969	2	0	0	2	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0036	22968	2	0	2	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0037	22969	2	0	1	0	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0038	22968	2	0	0	0	1	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0039	22967	2	0	1	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0040	22969	2	0	0	1	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0041	22968	2	0	0	2	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0042	22962	2	0	1	0	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0043	22961	2	0	2	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0044	22968	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0045	22970	2	0	0	2	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0046	22968	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0047	22968	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0048	22969	2	0	0	2	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0049	22966	2	0	0	1	0	1	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0050	22967	2	0	0	2	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625