JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOPCHAP1_chr12_104981316_105022625	0/0	t0151	22967	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0152	22968	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0153	22967	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0154	22967	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0155	22968	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0156	22967	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0157	22967	1	1	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0158	22968	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0159	22968	1	0	1	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0160	22968	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0161	22967	1	0	1	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0162	22966	1	0	0	0	1	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0163	22968	1	1	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0164	22968	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0165	22968	1	0	1	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0166	22968	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0167	22968	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0168	22969	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0169	22969	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0170	22969	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	t0171	22968	1	1	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOS1AP_chr1_162064691_162375475	0/1	t0001	3492	47	3	16	24	1	2	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0002	3499	41	13	12	10	0	6	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0003	3495	26	16	6	3	1	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0004	3500	10	0	2	7	0	1	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0005	3499	8	8	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0006	3497	7	4	0	0	0	3	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0007	3495	5	5	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0008	3509	3	3	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0009	3500	3	2	1	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0010	3499	3	3	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0011	3499	3	3	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0012	3497	2	2	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0013	3495	2	2	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0014	3495	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0015	3500	1	0	1	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0016	3497	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0017	3499	1	0	0	1	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0018	3495	1	0	0	1	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0019	3499	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0020	3499	1	0	1	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0021	3513	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0022	3499	1	0	0	0	0	1	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	1/0	t0023	3496	1	0	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0024	3497	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0025	3497	1	0	0	0	0	1	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0026	3497	1	0	0	1	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0027	3497	1	0	0	1	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0028	3495	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0029	3492	1	0	0	1	0	0	copy fasta	NOS1AP	chr1	162064691	162375475