JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOS1AP_chr1_162064691_162375475	0/0	t0030	3500	1	0	1	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0031	3509	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0032	3492	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0033	3492	1	0	0	1	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0034	3497	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	t0035	3497	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1_chr12_117203142_117366626	0/0	t0001	7703	22	2	5	7	3	5	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0002	7702	21	0	7	9	1	4	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0003	7721	11	2	0	9	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0004	7703	9	0	2	7	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0005	7728	6	0	6	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0006	7718	4	2	1	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0007	7703	3	0	0	3	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0008	7721	3	0	0	3	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0009	7702	3	0	2	0	1	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0010	7723	3	1	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0011	7704	3	0	1	0	0	2	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0012	7730	3	3	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0013	7723	3	3	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0014	7700	3	0	0	2	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0015	7718	3	0	0	3	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0016	7720	3	3	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0017	7702	3	3	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0018	7723	2	0	2	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0019	7718	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0020	7699	2	0	0	1	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0021	7703	2	0	1	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0022	7722	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0023	7723	2	1	0	0	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0024	7701	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0025	7702	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	1/0	t0026	7703	2	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0027	7719	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0028	7720	2	0	0	1	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0029	7719	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0030	7721	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0031	7718	2	2	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0032	7723	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0033	7726	2	1	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0034	7730	2	0	0	0	2	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0035	7703	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0036	7720	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0037	7718	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0038	7705	2	0	0	2	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0039	7718	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0040	7720	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0041	7702	1	0	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0042	7703	1	0	0	0	1	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0043	7702	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0044	7720	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626