JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOS1_chr12_117203142_117366626	0/0	t0145	7699	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0146	7722	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0147	7724	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0148	7722	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0149	7720	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0150	7721	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0151	7703	1	0	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0152	7720	1	0	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0153	7704	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0154	7721	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0155	7720	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0156	7707	1	0	0	0	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0157	7726	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0158	7722	1	0	0	0	1	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0159	7716	1	0	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0160	7704	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0161	7703	1	0	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0162	7722	1	0	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0163	7724	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0164	7714	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0165	7721	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0166	7719	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0167	7715	1	0	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0168	7723	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0169	7721	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0170	7701	1	0	0	0	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0171	7726	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0172	7722	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0173	7704	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0174	7723	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0175	7720	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0176	7722	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0177	7702	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0178	7703	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0179	7702	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0180	7702	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0181	7704	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0182	7728	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0183	7725	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	t0184	7722	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS2_chr17_27751766_27805529	0/1	t0001	745	235	52	53	94	12	23	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	1/0	t0002	745	147	34	19	80	2	11	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0003	745	3	0	0	1	0	2	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0004	745	3	0	1	0	1	1	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0005	745	2	0	0	0	1	1	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0006	745	2	0	0	2	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0007	745	2	0	0	0	2	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0008	745	1	1	0	0	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0009	745	1	0	0	0	0	1	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0010	745	1	1	0	0	0	0	copy fasta	NOS2	chr17	27751766	27805529