Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARMC9_chr2_231193631_231381848	0/0	t0056	5419	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0057	5423	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0058	5425	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0059	5395	1	0	1	0	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0060	5395	1	0	1	0	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	t0061	5425	1	0	0	0	0	1	copy fasta	ARMC9	chr2	231193631	231381848
ARMCX1_chrX_101545547_101559700	1/0	t0001	764	133	11	23	81	4	13	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/1	t0002	766	61	6	17	20	7	10	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	t0003	765	34	25	2	4	0	3	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	t0004	765	34	28	2	2	0	2	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	t0005	766	31	1	4	22	1	3	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	t0006	765	5	4	1	0	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	t0007	764	3	1	0	0	1	1	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	t0008	766	1	0	0	1	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX2_chrX_101650281_101664850	1/0	t0001	921	280	50	51	145	11	22	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/1	t0002	924	48	28	5	3	2	9	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	t0003	921	4	0	0	4	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	t0004	925	1	0	0	0	0	1	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	t0005	922	1	0	1	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	t0006	921	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX3_chrX_101618151_101632843	1/1	t0001	2209	257	48	44	133	10	20	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0002	2209	32	18	7	0	3	4	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0003	2209	2	2	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0004	2209	2	2	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0005	2209	1	0	0	1	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0006	2209	1	0	0	1	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0007	2209	1	1	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0008	2209	1	1	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0009	2209	1	1	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	t0010	2209	1	1	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX4_chrX_101480456_101500807	0/1	t0001	857	154	49	31	46	8	19	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	1/0	t0002	857	114	10	18	73	2	10	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0003	857	30	1	2	23	1	3	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0004	857	13	13	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0005	857	7	5	2	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0006	857	2	0	0	2	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0007	857	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0008	856	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0009	856	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0010	858	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0011	857	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	t0012	857	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX5_chrX_102594515_102609159	1/1	t0001	1096	300	74	46	133	13	32	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	t0002	1096	11	0	0	10	0	1	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	t0003	1096	2	2	0	0	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	t0004	1096	1	0	1	0	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	t0005	1097	1	0	0	1	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	t0006	1096	1	0	0	0	0	1	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX6_chrX_101610125_101623000	1/1	t0001	938	81	28	13	24	4	10	copy fasta	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	t0002	938	10	10	0	0	0	0	copy fasta	ARMCX6	chrX	101610125	101623000