JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOS2_chr17_27751766_27805529	0/0	t0011	727	1	0	0	1	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0012	745	1	0	1	0	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0013	745	1	0	0	1	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0014	745	1	0	0	1	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	t0015	745	1	0	0	0	0	1	copy fasta	NOS2	chr17	27751766	27805529
NOS3_chr7_150986017_151019588	1/1	t0001	755	373	90	69	161	12	39	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	t0002	755	3	0	2	0	0	1	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	t0003	755	2	2	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	t0004	779	1	0	0	1	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	t0005	755	1	1	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	t0006	755	1	0	1	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	t0007	755	1	1	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOSIP_chr19_49550468_49585556	1/1	t0001	326	233	63	50	68	12	38	copy fasta	NOSIP	chr19	49550468	49585556
NOSIP_chr19_49550468_49585556	0/0	t0002	326	67	33	12	22	0	0	copy fasta	NOSIP	chr19	49550468	49585556
NOSIP_chr19_49550468_49585556	0/0	t0003	326	2	0	0	1	0	1	copy fasta	NOSIP	chr19	49550468	49585556
NOSIP_chr19_49550468_49585556	0/0	t0004	326	1	0	0	0	0	1	copy fasta	NOSIP	chr19	49550468	49585556
NOSIP_chr19_49550468_49585556	0/0	t0005	326	1	0	0	1	0	0	copy fasta	NOSIP	chr19	49550468	49585556
NOSTRIN_chr2_168797637_168870514	1/0	t0001	555	181	40	39	73	7	21	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/1	t0002	555	108	22	23	40	5	17	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	t0003	555	33	28	2	0	2	1	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	t0004	555	2	2	0	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	t0005	555	1	0	0	1	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	t0006	555	1	0	0	0	0	1	copy fasta	NOSTRIN	chr2	168797637	168870514
NOTCH1_chr9_136489433_136551048	0/0	t0001	1901	61	12	15	16	4	14	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0002	1901	54	13	17	12	2	10	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0003	1901	43	7	7	26	1	2	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0004	1901	36	18	5	11	0	2	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0005	1901	21	4	8	6	1	2	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0006	1901	20	1	11	0	4	4	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0007	1901	16	0	1	15	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0008	1888	15	5	3	2	0	5	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	1/1	t0009	1901	10	0	3	1	0	4	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0010	1901	9	1	1	6	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0011	1901	5	0	1	4	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0012	1888	4	3	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0013	1901	4	4	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0014	1901	3	3	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0015	1888	2	1	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0016	1901	2	1	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0017	1901	2	2	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0018	1888	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0019	1888	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0020	1888	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0021	1878	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0022	1901	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0023	1901	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0024	1901	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0025	1901	1	0	0	0	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0026	1901	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	t0027	1901	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048