JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOTCH2_chr1_119906553_120074662	0/0	t0006	4010	4	4	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0007	4010	4	0	0	4	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0008	4010	3	3	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0009	4019	2	2	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0010	4010	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0011	4010	1	0	1	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0012	4007	1	0	0	0	1	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0013	4010	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0014	4010	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0015	4010	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0016	4010	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0017	4010	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0018	4010	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	t0019	4010	1	0	0	0	0	1	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH3_chr19_15154038_15205995	0/1	t0001	1715	177	53	38	54	12	19	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	1/0	t0002	1715	60	0	15	36	2	6	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0003	1715	48	22	8	17	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0004	1715	13	0	0	9	0	4	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0005	1715	7	0	2	4	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0006	1716	6	0	0	6	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0007	1715	6	5	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0008	1716	3	2	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0009	1715	3	0	0	0	0	3	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0010	1715	2	0	0	2	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0011	1715	2	2	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0012	1715	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0013	1715	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0014	1716	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0015	1715	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0016	1715	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0017	1715	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0018	1715	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0019	1715	1	0	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0020	1715	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0021	1715	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0022	1716	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0023	1716	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	t0024	1715	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH4_chr6_32189843_32229067	0/0	t0001	734	212	62	22	101	8	19	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	t0002	734	182	23	43	85	6	25	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/1	t0003	734	41	10	12	16	2	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	t0004	734	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	t0005	734	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTO_chr2_73197574_73217513	1/1	t0001	1678	150	5	30	81	7	25	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0002	1679	114	20	18	62	6	8	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0003	1679	32	24	7	0	1	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0004	1679	24	14	1	4	2	3	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0005	1679	15	15	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0006	1679	9	0	6	0	0	3	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0007	1679	6	4	2	0	0	0	copy fasta	NOTO	chr2	73197574	73217513