JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOTO_chr2_73197574_73217513	0/0	t0008	1679	5	5	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0009	1678	5	0	5	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0010	1679	4	0	2	0	0	2	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0011	1678	3	3	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0012	1678	3	0	0	3	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0013	1679	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0014	1679	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0015	1679	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0016	1679	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0017	1679	1	0	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0018	1678	1	0	0	0	0	1	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0019	1678	1	0	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0020	1678	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0021	1678	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	t0022	1678	1	0	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTUM_chr17_81947507_81966187	1/1	t0001	733	318	70	62	132	15	37	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0002	733	26	0	1	24	0	1	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0003	734	8	3	1	1	1	2	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0004	733	5	0	3	0	2	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0005	716	5	5	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0006	733	4	4	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0007	733	3	1	2	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0008	719	3	3	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0009	733	3	2	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0010	733	2	0	0	0	0	2	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0011	732	2	1	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0012	733	1	0	0	1	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0013	732	1	0	0	1	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0014	743	1	0	0	1	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0015	733	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	t0016	733	1	0	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOVA1_chr14_26438090_26603033	0/0	t0001	5469	66	5	14	39	3	5	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0002	5468	35	17	2	14	0	2	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0003	5470	24	0	4	14	2	4	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0004	5469	22	10	0	10	0	2	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0005	5468	15	14	1	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0006	5469	14	3	5	5	0	1	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	1/0	t0007	5467	14	9	2	1	0	1	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0008	5467	9	9	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0009	5470	5	1	0	4	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0010	5468	5	2	1	2	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/1	t0011	5470	4	0	0	3	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0012	5468	3	3	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0013	5471	2	0	0	2	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0014	5469	2	2	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0015	5468	2	2	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0016	5467	2	2	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0017	5468	2	2	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0018	5467	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0019	5471	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033