JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOVA1_chr14_26438090_26603033	0/0	t0020	5471	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0021	5469	1	0	0	0	1	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0022	5470	1	0	0	0	0	1	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0023	5469	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0024	5522	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0025	5469	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0026	5469	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0027	5470	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0028	5470	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0029	5469	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0030	5469	1	0	1	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0031	5467	1	1	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0032	5466	1	1	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0033	5468	1	1	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0034	5469	1	1	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	t0035	5468	1	1	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA2_chr19_45928734_45978865	0/0	t0001	6642	54	14	8	28	1	3	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0002	6643	54	8	20	20	2	4	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0003	6643	20	4	3	10	1	2	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0004	6642	19	2	1	11	0	5	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0005	6641	18	4	2	11	1	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0006	6642	16	1	6	9	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0007	6642	16	2	3	9	0	2	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0008	6642	12	0	0	12	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0009	6643	11	7	1	2	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	1/0	t0010	6644	10	1	4	0	3	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0011	6645	8	8	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0012	6641	7	3	0	3	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0013	6642	6	0	0	4	0	2	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0014	6644	6	1	1	3	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0015	6642	5	1	2	2	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0016	6643	5	2	0	1	0	2	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0017	6643	5	0	0	5	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0018	6643	4	1	2	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0019	6643	4	1	3	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0020	6641	3	0	0	3	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0021	6642	3	0	2	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0022	6642	3	0	1	0	1	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0023	6644	3	0	3	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0024	6644	3	0	0	3	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0025	6643	3	0	0	3	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0026	6643	3	0	0	2	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0027	6643	3	0	1	2	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0028	6644	3	2	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0029	6642	2	0	0	1	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0030	6641	2	0	0	2	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/1	t0031	6642	2	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0032	6639	2	2	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0033	6642	2	0	0	2	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0034	6643	2	0	0	2	0	0	copy fasta	NOVA2	chr19	45928734	45978865