JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOVA2_chr19_45928734_45978865	0/0	t0035	6643	2	2	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0036	6642	2	1	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0037	6643	2	0	0	1	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0038	6646	2	2	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0039	6642	2	0	0	2	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0040	6642	2	0	0	2	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0041	6643	1	0	0	0	1	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0042	6643	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0043	6642	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0044	6642	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0045	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0046	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0047	6644	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0048	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0049	6645	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0050	6644	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0051	6644	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0052	6624	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0053	6606	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0054	6627	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0055	6641	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0056	6641	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0057	6640	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0058	6641	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0059	6641	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0060	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0061	6642	1	0	0	0	1	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0062	6643	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0063	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0064	6642	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0065	6642	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0066	6642	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0067	6643	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0068	6642	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0069	6642	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0070	6642	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0071	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0072	6642	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0073	6641	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0074	6642	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0075	6642	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0076	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0077	6643	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0078	6644	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0079	6643	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0080	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0081	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0082	6643	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0083	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0084	6632	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865