JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOVA2_chr19_45928734_45978865	0/0	t0085	6645	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0086	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0087	6643	1	0	0	0	1	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0088	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0089	6644	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0090	6644	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0091	6644	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0092	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0093	6635	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0094	6642	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0095	6643	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0096	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0097	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0098	6642	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0099	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0100	6640	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0101	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0102	6643	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0103	6645	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0104	6644	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0105	6644	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0106	6644	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0107	6643	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0108	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0109	6642	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0110	6643	1	0	0	1	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	t0111	6644	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOX1_chrX_100838324_100879359	0/1	t0001	846	150	40	31	55	6	17	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	1/0	t0002	849	136	24	21	70	5	15	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	t0003	849	5	5	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	t0004	849	5	0	0	5	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	t0005	846	2	2	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	t0006	846	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	t0007	849	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	t0008	848	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	t0009	846	1	1	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX3_chr6_155390368_155460839	1/0	t0001	274	282	70	59	111	8	33	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/1	t0002	274	72	15	12	35	2	7	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	t0003	274	5	5	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	t0004	274	2	1	1	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	t0005	274	1	1	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX4_chr11_89319353_89496375	0/1	t0001	2533	40	5	11	18	1	4	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0002	2533	25	9	6	8	0	2	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	1/0	t0003	2533	13	0	5	6	1	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0004	2534	10	0	4	3	2	1	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0005	2533	9	3	2	3	1	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0006	2540	8	1	1	6	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0007	2534	6	0	1	4	0	1	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0008	2533	6	0	2	2	0	2	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0009	2542	6	3	0	3	0	0	copy fasta	NOX4	chr11	89319353	89496375