Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARMCX6_chrX_101610125_101623000	0/0	t0003	938	1	0	0	1	0	0	copy fasta	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	t0004	938	1	0	0	0	1	0	copy fasta	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	t0005	938	1	0	0	0	0	1	copy fasta	ARMCX6	chrX	101610125	101623000
ARMH1_chr1_44669714_44730591	1/1	t0001	371	283	79	67	93	10	32	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	t0002	371	4	3	1	0	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	t0003	371	1	0	0	1	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH2_chr6_24792335_24803917	1/1	t0001	136	437	92	84	199	14	46	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	t0002	136	7	0	0	7	0	0	copy fasta	ARMH2	chr6	24792335	24803917
ARMH3_chr10_101840599_102061173	1/0	t0001	2030	100	22	17	51	3	6	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/1	t0002	2030	78	16	14	31	5	11	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0003	2030	42	2	12	21	6	1	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0004	2030	12	11	1	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0005	2030	11	0	2	9	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0006	2030	7	5	2	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0007	2028	3	3	0	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0008	2030	2	0	1	0	0	1	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0009	2030	2	0	0	2	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0010	2030	1	0	1	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0011	2030	1	0	1	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0012	2030	1	0	1	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0013	2030	1	0	0	0	0	1	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	t0014	2030	1	1	0	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH4_chr14_57995761_58157213	1/0	t0001	4171	69	23	18	23	0	4	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0002	4154	49	1	8	33	2	5	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0003	4171	33	12	4	8	0	9	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/1	t0004	4171	18	4	4	6	0	3	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0005	4164	16	8	2	0	1	5	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0006	4154	16	0	1	12	1	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0007	4171	6	6	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0008	4164	5	5	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0009	4154	5	0	3	0	1	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0010	4154	5	5	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0011	4164	4	2	2	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0012	4164	3	2	1	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0013	4171	3	0	0	3	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0014	4171	2	2	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0015	4171	2	1	1	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0016	4171	2	2	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0017	4154	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0018	4171	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0019	4154	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0020	4154	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0021	4154	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0022	4154	1	0	0	0	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0023	4154	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0024	4154	1	0	0	0	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0025	4154	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0026	4154	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0027	4154	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0028	4154	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213