JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOX4_chr11_89319353_89496375	0/0	t0110	2534	1	0	1	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0111	2525	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0112	2514	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0113	2542	1	0	1	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0114	2524	1	0	1	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0115	2533	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0116	2534	1	0	0	0	1	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	t0117	2528	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX5_chr15_69009695_69067762	0/1	t0001	6109	179	36	34	76	7	25	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0002	6109	87	13	17	44	3	10	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0003	6109	49	9	4	35	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0004	6109	11	0	0	11	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	1/0	t0005	6108	10	8	1	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0006	6108	9	9	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0007	6109	4	0	2	0	1	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0008	6109	4	0	0	4	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0009	6109	4	4	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0010	6109	3	0	0	3	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0011	6109	3	0	0	3	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0012	6109	3	0	0	3	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0013	6109	2	0	1	0	1	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0014	6109	2	0	0	0	0	2	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0015	6109	2	0	0	2	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0016	6109	1	0	0	0	1	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0017	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0018	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0019	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0020	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0021	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0022	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0023	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0024	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0025	6109	1	0	1	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0026	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0027	6109	1	0	0	0	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0028	6108	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0029	6109	1	0	0	0	1	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0030	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0031	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0032	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0033	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0034	6109	1	0	0	0	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0035	6109	1	0	0	0	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0036	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0037	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0038	6109	1	0	0	1	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	t0039	6109	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOXA1_chr9_137418393_137439406	1/1	t0001	184	362	77	59	169	14	41	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	t0002	184	37	15	17	0	2	3	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	t0003	184	3	3	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406