JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NOXA1_chr9_137418393_137439406	0/0	t0004	184	1	1	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	t0005	184	1	0	0	1	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXO1_chr16_1973917_1986469	1/0	t0001	426	305	42	60	141	16	45	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/1	t0002	426	133	52	20	54	2	4	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	t0003	426	2	2	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	t0004	426	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	t0005	426	1	0	0	0	0	1	copy fasta	NOXO1	chr16	1973917	1986469
NOXRED1_chr14_77389021_77428523	1/1	t0001	1245	139	12	34	73	3	15	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0002	1245	95	50	14	12	4	15	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0003	1245	37	5	17	2	3	10	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0004	1245	10	9	1	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0005	1245	6	5	1	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0006	1245	3	0	1	0	2	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0007	1245	2	2	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0008	1245	1	1	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0009	1245	1	1	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0010	1245	1	1	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0011	1245	1	0	0	1	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0012	1245	1	1	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	t0013	1245	1	1	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NPAP1_chr15_24670775_24688393	1/0	t0001	4149	117	10	27	58	5	16	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0002	4149	37	10	2	21	0	4	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0003	4144	33	0	8	15	5	5	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0004	4147	20	0	3	13	2	2	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0005	4153	17	15	0	2	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0006	4165	16	0	9	5	0	2	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0007	4143	15	0	4	9	2	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0008	4169	12	0	1	9	1	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0009	4153	11	0	0	11	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/1	t0010	4145	10	2	4	2	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0011	4139	9	1	1	5	0	2	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0012	4143	9	0	0	9	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0013	4149	8	0	0	8	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0014	4153	8	3	0	4	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0015	4150	8	0	0	8	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0016	4173	7	0	0	7	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0017	4204	6	6	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0018	4149	6	6	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0019	4149	5	5	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0020	4161	4	0	0	4	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0021	4161	4	2	1	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0022	4147	3	0	1	0	2	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0023	4169	3	3	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0024	4135	3	2	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0025	4139	3	3	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0026	4149	3	0	0	3	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0027	4149	3	2	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0028	4145	3	0	3	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0029	4169	2	1	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0030	4173	2	0	1	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393