JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPAP1_chr15_24670775_24688393	0/0	t0031	4165	2	1	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0032	4208	2	2	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0033	4151	2	0	1	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0034	4145	2	2	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0035	4141	2	0	0	0	1	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0036	4141	2	0	2	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0037	4171	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0038	4167	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0039	4161	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0040	4173	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0041	4164	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0042	4200	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0043	4204	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0044	4200	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0045	4147	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0046	4143	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0047	4147	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0048	4148	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0049	4147	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0050	4141	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0051	4148	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0052	4146	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0053	4148	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0054	4140	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0055	4144	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0056	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0057	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0058	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0059	4157	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0060	4149	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0061	4145	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0062	4145	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0063	4154	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0064	4153	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0065	4152	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0066	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0067	4154	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0068	4150	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0069	4154	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0070	4149	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0071	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0072	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0073	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0074	4148	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0075	4157	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0076	4170	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0077	4145	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0078	4145	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0079	4145	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	t0080	4137	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393