JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPAP1_chr15_24670775_24688393	0/0	t0081	4149	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAS1_chr19_47014837_47050775	1/1	t0001	328	409	96	72	171	18	50	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	t0002	328	4	0	4	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	t0003	328	3	0	0	3	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	t0004	328	2	2	0	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS2_chr2_100815139_101001829	1/1	t0001	1546	120	40	10	56	2	10	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0002	1546	41	5	5	22	5	4	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0003	1546	38	15	4	17	0	2	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0004	1552	22	0	4	11	2	5	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0005	1546	16	13	2	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0006	1552	14	0	8	4	0	2	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0007	1546	10	3	3	1	1	2	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0008	1552	6	0	1	2	1	2	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0009	1546	3	0	0	3	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0010	1549	3	0	0	3	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0011	1552	3	0	0	3	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0012	1546	2	2	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0013	1561	2	0	0	0	0	2	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0014	1546	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0015	1546	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0016	1546	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0017	1549	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0018	1552	1	0	0	0	1	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0019	1552	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0020	1561	1	0	0	0	0	1	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	t0021	1561	1	0	1	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS3_chr14_32933879_33809173	0/0	t0001	3499	8	3	4	0	0	1	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/1	t0002	3499	7	4	0	0	1	1	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0003	3497	4	4	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0004	3500	3	3	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0005	3501	3	3	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0006	3500	3	3	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0007	3495	3	0	1	0	0	2	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0008	3493	2	2	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0009	3497	2	1	0	0	1	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0010	3500	2	2	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0011	3497	2	2	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0012	3499	2	1	0	0	1	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0013	3498	2	1	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0014	3502	2	2	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0015	3475	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0016	3473	1	0	0	0	0	1	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0017	3495	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0018	3499	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0019	3500	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0020	3499	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0021	3494	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0022	3495	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0023	3498	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0024	3502	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173