JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPAS3_chr14_32933879_33809173	0/0	t0025	3498	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0026	3497	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0027	3494	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0028	3493	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0029	3496	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0030	3502	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0031	3493	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0032	3496	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0033	3494	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0034	3494	1	0	0	1	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0035	3498	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0036	3494	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0037	3493	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0038	3498	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	1/0	t0039	3503	1	0	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0040	3497	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0041	3496	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0042	3498	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0043	3543	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0044	3503	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0045	3502	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0046	3502	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0047	3494	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0048	3495	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0049	3499	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0050	3501	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0051	3497	1	0	0	0	0	1	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0052	3501	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0053	3498	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0054	3498	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0055	3499	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0056	3494	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0057	3498	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0058	3496	1	0	0	1	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0059	3501	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0060	3499	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	t0061	3495	1	0	0	0	1	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS4_chr11_66416035_66431707	1/1	t0001	864	281	58	44	138	14	25	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0002	863	135	29	33	62	4	7	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0003	864	1	0	0	0	0	1	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0004	864	1	0	0	1	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0005	932	1	0	0	1	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0006	864	1	1	0	0	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0007	864	1	0	0	0	0	1	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0008	864	1	0	0	0	0	1	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0009	864	1	0	0	0	0	1	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	t0010	864	1	0	1	0	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAT_chr11_108152215_108227638	0/1	t0001	1831	163	29	27	70	11	25	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	1/0	t0002	1830	155	51	24	66	2	11	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0003	1831	16	0	5	10	1	0	copy fasta	NPAT	chr11	108152215	108227638