JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPAT_chr11_108152215_108227638	0/0	t0004	1830	5	5	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0005	1831	4	3	1	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0006	1830	2	0	0	2	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0007	1830	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0008	1831	1	0	0	0	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0009	1830	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0010	1830	1	0	1	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	t0011	1831	1	0	0	0	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPBWR1_chr8_52934182_52948734	0/0	t0001	3223	129	7	17	83	5	17	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	1/1	t0002	3223	114	10	26	70	1	5	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0003	3223	53	34	3	15	0	1	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0004	3223	21	5	5	4	3	4	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0005	3223	19	6	3	6	0	4	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0006	3223	8	6	2	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0007	3223	7	0	3	0	1	3	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0008	3225	7	0	6	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0009	3223	6	0	5	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0010	3223	3	0	0	3	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0011	3223	3	0	0	2	0	1	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0012	3223	3	0	2	0	1	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0013	3227	3	3	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0014	3223	3	3	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0015	3223	2	0	0	2	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0016	3223	2	2	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0017	3223	2	0	0	0	0	2	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0018	3223	2	1	1	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0019	3223	2	2	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0020	3223	2	0	2	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0021	3225	2	2	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0022	3223	1	0	1	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0023	3223	1	0	1	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0024	3223	1	1	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0025	3223	1	1	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0026	3223	1	1	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0027	3223	1	1	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0028	3223	1	1	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0029	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0030	3223	1	1	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0031	3223	1	0	0	0	0	1	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0032	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0033	3223	1	0	0	0	0	1	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0034	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0035	3234	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0036	3223	1	1	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0037	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0038	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0039	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0040	3223	1	0	0	0	0	1	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0041	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0042	3223	1	0	1	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734