JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPBWR1_chr8_52934182_52948734	0/0	t0043	3223	1	0	0	0	1	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	t0044	3223	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR2_chr20_64098802_64112565	0/0	t0001	2327	53	23	7	6	6	11	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0002	2381	26	2	6	18	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0003	2315	22	3	5	10	3	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0004	2331	20	0	7	7	2	4	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0005	2357	16	0	8	2	2	4	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0006	2474	16	0	4	11	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0007	2333	10	0	0	9	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/1	t0008	2278	7	0	0	0	0	6	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0009	2251	5	0	2	0	0	3	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0010	2327	5	5	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0011	2525	5	0	3	1	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0012	2315	5	0	0	5	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0013	2327	5	5	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0014	2345	5	5	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0015	2417	4	0	0	0	0	4	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0016	2381	4	0	0	4	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0017	2675	4	0	0	4	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0018	2328	4	3	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0019	2351	3	3	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0020	2297	3	0	0	3	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0021	2807	3	0	0	3	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0022	2322	3	0	3	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0023	2322	3	2	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0024	2328	3	3	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0025	2331	3	0	0	3	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0026	2381	2	2	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0027	2411	2	2	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0028	2297	2	0	0	1	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0029	2435	2	0	0	2	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0030	2297	2	1	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0031	2375	2	2	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0032	2426	2	0	2	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0033	3059	2	0	2	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0034	2327	2	0	0	1	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0035	2298	2	0	0	2	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0036	2350	2	2	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0037	2573	2	2	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0038	2327	2	0	2	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0039	2639	2	0	0	1	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0040	2316	2	2	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0041	2901	2	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0042	2327	2	0	1	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0043	2278	1	0	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0044	2653	1	0	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0045	2415	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0046	2386	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0047	2381	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0048	2327	1	0	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565