JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NPBWR2_chr20_64098802_64112565	0/0	t0049	2315	1	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0050	2406	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0051	2327	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0052	2417	1	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0053	2381	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0054	2351	1	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0055	2624	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0056	2442	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0057	2330	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0058	2327	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0059	2315	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0060	2303	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0061	2369	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0062	2369	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0063	2315	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0064	2315	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0065	2303	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0066	2321	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0067	2315	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0068	2760	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0069	2300	1	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0070	2480	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0071	2375	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0072	2615	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0073	2345	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0074	2536	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0075	2524	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0076	2327	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0077	2417	1	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0078	2327	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0079	2327	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0080	2438	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0081	2453	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0082	2465	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0083	2528	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0084	2420	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0085	3060	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0086	3228	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0087	2381	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0088	2597	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0089	2474	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0090	2479	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0091	2578	1	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0092	2596	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0093	2697	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0094	2354	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0095	2399	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0096	2375	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0097	2555	1	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0098	2504	1	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565