JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPBWR2_chr20_64098802_64112565	0/0	t0099	2681	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0100	2822	1	0	1	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0101	2807	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0102	2706	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0103	3143	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0104	2789	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0105	2639	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0106	2590	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0107	2816	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0108	2774	1	0	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0109	2808	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0110	2944	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0111	2976	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0112	2279	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0113	2295	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0114	2316	1	0	0	0	0	1	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0115	2322	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0116	2362	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0117	2413	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0118	2316	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0119	2328	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0120	2769	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0121	2327	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0122	2399	1	0	0	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0123	2332	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0124	2343	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0125	2332	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	t0126	2332	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPB_chr17_81897238_81907905	1/1	t0001	198	295	80	54	107	8	44	copy fasta	NPB	chr17	81897238	81907905
NPB_chr17_81897238_81907905	0/0	t0002	198	1	0	0	1	0	0	copy fasta	NPB	chr17	81897238	81907905
NPC1L1_chr7_44507535_44546330	1/0	t0001	984	277	71	52	115	11	27	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/1	t0002	984	11	0	2	3	2	3	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	t0003	984	11	10	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	t0004	984	10	0	1	4	3	2	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	t0005	984	7	0	3	0	2	2	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	t0006	984	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	t0007	984	1	0	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	t0008	984	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	t0009	984	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1_chr18_23526442_23591506	1/1	t0001	924	281	58	56	123	12	30	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0002	923	49	0	0	43	0	6	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0003	924	29	23	3	2	0	1	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0004	924	4	4	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0005	924	4	4	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0006	924	2	2	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0007	923	2	0	0	1	0	1	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0008	923	2	0	2	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0009	924	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0010	924	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0011	924	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506