Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARMH4_chr14_57995761_58157213	0/0	t0029	4171	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0030	4171	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0031	4171	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0032	4171	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0033	4171	1	0	0	0	1	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0034	4171	1	0	0	0	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0035	4171	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	t0036	4171	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMS2_chr10_122449653_122462352	1/0	t0001	495	263	66	49	113	10	24	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/1	t0002	488	130	28	19	72	4	6	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	t0003	495	18	3	6	0	0	9	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	t0004	495	10	1	4	0	4	1	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	t0005	495	1	1	0	0	0	0	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	t0006	495	1	1	0	0	0	0	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	t0007	495	1	0	0	1	0	0	copy fasta	ARMS2	chr10	122449653	122462352
ARMT1_chr6_151447466_151475101	1/1	t0001	1072	410	88	74	190	14	42	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	t0002	1072	3	3	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	t0003	1072	1	1	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	t0004	1072	1	0	0	1	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	t0005	1072	1	0	0	1	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	t0006	1072	1	0	0	1	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	t0007	1072	1	0	0	1	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARNT2_chr15_80399382_80602933	0/0	t0001	4370	60	9	8	35	2	6	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0002	4370	42	0	4	34	1	3	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	1/1	t0003	4370	27	2	8	5	4	6	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0004	4370	15	3	1	9	0	2	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0005	4370	14	13	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0006	4370	14	12	2	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0007	4370	14	5	2	0	3	4	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0008	4370	7	1	2	0	0	4	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0009	4370	7	7	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0010	4370	6	1	0	5	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0011	4370	5	4	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0012	4369	4	4	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0013	4370	4	4	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0014	4371	3	3	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0015	4371	3	0	0	3	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0016	4370	2	2	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0017	4370	2	2	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0018	4370	2	2	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0019	4370	2	0	2	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0020	4370	2	0	1	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0021	4370	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0022	4370	1	0	0	0	1	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0023	4370	1	0	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0024	4370	1	0	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0025	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0026	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0027	4371	1	0	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0028	4370	1	0	0	0	0	1	copy fasta	ARNT2	chr15	80399382	80602933