JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPC1_chr18_23526442_23591506	0/0	t0012	924	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	t0013	924	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC2_chr14_74474940_74498305	1/1	t0001	366	400	90	63	189	16	40	copy fasta	NPC2	chr14	74474940	74498305
NPC2_chr14_74474940_74498305	0/0	t0002	366	6	0	5	1	0	0	copy fasta	NPC2	chr14	74474940	74498305
NPC2_chr14_74474940_74498305	0/0	t0003	366	1	0	1	0	0	0	copy fasta	NPC2	chr14	74474940	74498305
NPC2_chr14_74474940_74498305	0/0	t0004	366	1	0	0	0	0	1	copy fasta	NPC2	chr14	74474940	74498305
NPC2_chr14_74474940_74498305	0/0	t0005	366	1	0	0	0	0	1	copy fasta	NPC2	chr14	74474940	74498305
NPC2_chr14_74474940_74498305	0/0	t0006	366	1	0	1	0	0	0	copy fasta	NPC2	chr14	74474940	74498305
NPDC1_chr9_137034463_137051177	1/0	t0001	498	301	73	49	137	5	36	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/1	t0002	498	64	1	27	21	5	9	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0003	498	21	9	5	7	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0004	498	9	0	0	9	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0005	498	2	0	2	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0006	498	1	0	0	1	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0007	525	1	0	1	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0008	498	1	0	0	0	0	1	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0009	498	1	0	0	1	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	t0010	498	1	1	0	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPEPL1_chr20_58687800_58720844	0/0	t0001	620	144	26	22	74	5	17	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	1/1	t0002	620	133	3	28	76	4	20	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0003	620	73	40	12	9	3	9	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0004	620	32	13	10	7	0	2	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0005	620	10	10	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0006	620	2	0	2	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0007	620	1	0	1	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0008	620	1	0	1	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0009	620	1	1	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	t0010	620	1	1	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPPS_chr17_47526108_47628276	1/1	t0001	1550	122	28	20	51	6	15	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0002	1553	101	13	20	51	2	15	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0003	1552	75	29	16	23	2	5	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0004	1552	31	1	1	28	1	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0005	1553	5	0	0	0	2	3	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0006	1553	2	0	1	0	1	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0007	1553	1	1	0	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0008	1553	1	0	1	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0009	1553	1	0	0	1	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0010	1553	1	0	0	1	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0011	1550	1	0	1	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	t0012	1552	1	0	0	1	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPFFR1_chr10_70242329_70289004	0/0	t0001	7957	69	2	23	41	0	3	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0002	7957	33	1	5	24	1	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0003	7957	10	9	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0004	7963	8	0	1	7	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0005	7962	8	0	1	6	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0006	7963	8	3	3	0	0	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0007	7956	7	2	0	5	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0008	7953	7	1	4	0	1	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/1	t0009	7957	6	0	4	0	1	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0010	7953	6	1	3	0	2	0	copy fasta	NPFFR1	chr10	70242329	70289004