JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPFFR1_chr10_70242329_70289004	0/0	t0011	7952	6	1	2	0	1	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0012	7952	6	1	2	0	1	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0013	7964	5	3	2	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0014	7957	5	5	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0015	7958	5	0	0	5	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0016	7962	5	2	0	0	0	3	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0017	7956	4	1	1	0	2	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0018	7956	4	4	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0019	7960	4	3	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0020	7957	4	2	0	1	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0021	7947	4	4	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0022	7956	4	0	0	4	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0023	7957	4	0	1	1	0	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0024	7956	4	0	1	3	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0025	7957	3	0	1	0	0	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0026	7957	3	3	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	1/0	t0027	7957	3	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0028	7959	3	0	0	3	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0029	7957	3	3	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0030	7956	3	0	0	3	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0031	7962	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0032	7961	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0033	7957	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0034	7963	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0035	7958	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0036	7963	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0037	7958	2	0	0	0	1	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0038	7959	2	0	0	2	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0039	7958	2	0	0	2	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0040	7957	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0041	7956	2	0	1	0	1	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0042	7959	2	1	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0043	7953	2	1	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0044	7952	2	0	1	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0045	7962	2	0	0	0	0	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0046	7949	2	2	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0047	7959	2	0	0	2	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0048	7952	2	0	0	0	0	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0049	7962	2	0	1	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0050	7957	2	0	2	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0051	7957	2	0	0	0	0	2	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0052	7964	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0053	7956	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0054	7957	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0055	7964	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0056	7959	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0057	7958	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0058	7959	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0059	7957	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0060	7957	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004