JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPFFR1_chr10_70242329_70289004	0/0	t0111	7957	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0112	7957	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0113	7957	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0114	7957	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0115	7957	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0116	7959	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0117	7958	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0118	7963	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0119	7959	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0120	7963	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0121	7957	1	0	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0122	7957	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0123	7953	1	0	0	0	1	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0124	7953	1	1	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0125	7952	1	0	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0126	7952	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0127	7954	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0128	7958	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0129	7953	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0130	7963	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0131	7957	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0132	7956	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	t0133	7958	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR2_chr4_72027000_72153305	1/1	t0001	702	199	33	34	87	10	33	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0002	702	132	42	21	66	0	3	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0003	702	5	4	1	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0004	702	2	2	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0005	702	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0006	702	1	0	0	1	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0007	702	1	0	0	1	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0008	702	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0009	702	1	0	0	1	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	t0010	702	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFF_chr12_53501688_53512484	1/1	t0001	99	338	88	70	114	16	48	copy fasta	NPFF	chr12	53501688	53512484
NPHP1_chr2_110118348_110210013	1/1	t0001	489	319	79	52	136	12	38	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	t0002	489	3	3	0	0	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP3_chr3_132675609_132727409	1/0	t0001	1356	160	49	35	55	5	15	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0002	1355	86	9	2	65	2	8	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0003	1354	33	1	8	20	1	3	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0004	1356	13	12	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0005	1357	10	2	1	4	0	3	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0006	1351	6	2	0	3	1	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0007	1356	5	4	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0008	1355	5	4	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0009	1353	4	4	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/1	t0010	1356	4	0	2	0	1	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0011	1351	2	0	0	2	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0012	1350	2	1	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0013	1356	2	2	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0014	1356	2	2	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409