JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPHP3_chr3_132675609_132727409	0/0	t0015	1383	2	0	0	2	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0016	1352	1	1	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0017	1356	1	0	0	0	0	1	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0018	1356	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0019	1356	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0020	1357	1	1	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	t0021	1356	1	0	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP4_chr1_5857811_5997425	0/0	t0001	675	192	54	44	52	8	34	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	t0002	675	7	7	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	t0003	675	5	5	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	t0004	675	2	2	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	t0005	675	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	t0006	675	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHS1_chr19_35820372_35857504	0/0	t0001	1810	118	0	23	82	3	10	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	1/0	t0002	1810	99	24	35	14	4	21	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0003	1808	30	17	0	13	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0004	1810	29	4	3	19	0	3	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0005	1810	13	1	6	0	0	6	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0006	1809	12	0	0	12	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0007	1806	8	3	3	0	2	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0008	1806	6	5	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0009	1810	6	6	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0010	1807	5	5	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0011	1810	4	0	1	0	3	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0012	1808	4	0	0	4	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0013	1810	3	0	0	0	0	3	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0014	1810	3	2	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0015	1810	3	0	1	0	2	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0016	1808	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0017	1807	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0018	1807	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0019	1807	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0020	1810	2	0	0	2	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0021	1810	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0022	1808	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0023	1808	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0024	1807	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0025	1807	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0026	1807	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0027	1806	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0028	1810	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0029	1809	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0030	1810	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0031	1810	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0032	1810	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0033	1810	1	0	0	0	1	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0034	1810	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0035	1809	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0036	1810	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0037	1810	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504