JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPHS1_chr19_35820372_35857504	0/0	t0038	1810	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0039	1810	1	0	0	0	1	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0040	1810	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0041	1810	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0042	1810	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0043	1810	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0044	1809	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0045	1809	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0046	1808	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0047	1808	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0048	1808	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	t0049	1808	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/1	t0050	1810	1	0	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS2_chr1_179545539_179580948	0/0	t0001	719	121	6	21	68	6	20	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0002	719	93	3	12	62	4	12	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/1	t0003	719	71	13	20	26	5	6	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0004	719	42	15	6	19	2	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	1/0	t0005	719	38	11	9	11	1	5	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0006	719	31	29	2	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0007	719	18	12	5	0	0	1	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0008	719	3	1	0	2	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0009	719	3	3	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0010	719	2	2	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0011	719	1	0	1	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	t0012	719	1	1	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPIPA1_chr16_14932443_14957056	0/1	t0001	32	251	48	41	128	6	27	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	t0002	32	2	0	1	0	0	1	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA2_chr16_14737533_14770462	0/1	t0001	400	169	47	30	60	9	22	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	t0002	400	30	5	4	15	1	5	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	t0003	400	3	0	0	2	0	1	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	t0004	400	1	0	0	1	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	t0005	400	1	1	0	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	t0006	400	1	1	0	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA3_chr16_14698411_14731342	0/0	t0001	638	23	13	0	6	2	2	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA3_chr16_14698411_14731342	0/0	t0002	638	1	1	0	0	0	0	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA5_chr16_15358628_15383294	0/0	t0001	32	282	77	53	99	17	36	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	t0002	32	82	5	11	59	1	6	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	t0003	32	65	2	14	41	0	8	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	t0004	30	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA7_chr16_16374140_16398972	0/0	t0001	155	120	20	29	46	4	21	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	t0002	155	9	2	0	4	0	3	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	t0003	155	1	0	1	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	t0004	155	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	t0005	155	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA8_chr16_18312919_18341736	0/0	t0001	479	26	5	4	16	1	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0002	479	4	1	1	2	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0003	479	2	0	0	2	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0004	460	1	0	1	0	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0005	460	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0006	478	1	0	0	0	1	0	copy fasta	NPIPA8	chr16	18312919	18341736