JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPIPB13_chr16_30217897_30253479	1/0	t0003	2876	21	4	3	11	2	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0004	2862	10	0	0	10	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0005	2876	8	0	0	4	2	2	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0006	2876	5	5	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0007	2876	5	2	0	2	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0008	2876	4	0	0	4	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0009	2862	2	0	1	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0010	2862	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0011	2876	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0012	2876	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0013	2876	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0014	2876	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0015	2876	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0016	2876	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0017	2876	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0018	2876	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0019	2876	1	0	0	0	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0020	2876	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0021	2876	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0022	2876	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0023	2876	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0024	2876	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB15_chr16_74371306_74397115	0/0	t0001	1099	113	12	12	78	1	10	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0002	1099	48	7	4	31	0	6	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0003	1099	39	6	9	21	1	2	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	1/0	t0004	1099	16	5	7	2	0	1	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0005	1099	16	1	10	5	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0006	1099	7	7	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0007	1099	6	5	0	0	0	1	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0008	1064	3	0	1	2	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0009	1099	2	0	0	0	0	2	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0010	1099	2	0	0	2	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0011	1099	2	2	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0012	1099	2	2	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0013	1099	1	1	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0014	1099	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0015	1099	1	0	1	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0016	1099	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	t0017	1099	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB4_chr16_21829582_21862756	0/0	t0001	352	203	39	58	72	8	26	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	t0002	352	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB5_chr16_22505891_22541535	1/0	t0001	3062	26	1	4	13	4	3	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0002	3062	4	1	1	2	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0003	3062	2	0	0	0	0	2	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0004	3062	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0005	3062	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0006	3062	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0007	3052	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0008	3051	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0009	3061	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535