JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPIPB5_chr16_22505891_22541535	0/0	t0010	3062	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0011	3062	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0012	3057	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0013	3062	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0014	3061	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0015	3062	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0016	3061	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0017	3062	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	t0018	3062	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB6_chr16_28337517_28368508	1/0	t0001	615	235	44	27	129	8	26	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	t0002	615	120	30	35	40	4	11	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	t0003	615	2	0	0	0	0	2	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	t0004	615	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	t0005	615	1	0	0	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	t0006	615	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	t0007	615	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB7_chr16_28451329_28477336	1/0	t0001	1994	181	38	26	78	5	33	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0002	2018	48	2	24	16	3	3	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0003	2010	16	0	0	16	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0004	1994	15	0	0	15	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0005	1994	13	12	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0006	1993	8	6	1	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0007	1994	6	5	0	0	1	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0008	1994	6	0	0	6	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0009	1994	5	0	5	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0010	1994	5	0	0	5	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0011	2018	4	0	0	4	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0012	1994	4	0	0	4	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0013	1993	4	0	0	4	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0014	2018	3	0	1	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0015	2018	3	0	3	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0016	1993	3	3	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0017	2018	2	0	2	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0018	2019	2	0	0	1	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0019	2001	2	0	0	1	1	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0020	1994	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0021	2011	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0022	1994	2	0	0	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0023	1994	2	0	0	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0024	1994	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0025	2010	2	0	0	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0026	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0027	1994	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0028	1994	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0029	1994	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0030	2028	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0031	2018	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0032	2018	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0033	1994	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0034	2019	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336