JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPIPB7_chr16_28451329_28477336	0/0	t0035	2019	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0036	1984	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0037	2020	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0038	2019	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0039	2052	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0040	2041	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0041	2018	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/1	t0042	2001	1	0	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0043	2018	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0044	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0045	1983	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0046	2019	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0047	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0048	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0049	1994	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0050	1938	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0051	1995	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0052	2005	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0053	2011	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0054	1994	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0055	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0056	1899	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0057	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0058	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0059	1994	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0060	1994	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0061	2018	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0062	2012	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0063	1994	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0064	1994	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	t0065	338	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB8_chr16_28633065_28663744	1/0	t0001	239	224	29	26	122	9	37	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0002	239	101	26	33	30	5	7	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0003	239	14	13	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0004	239	7	0	0	7	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0005	239	1	0	0	0	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0006	239	1	0	0	0	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0007	239	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0008	239	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	t0009	239	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB9_chr16_28746787_28777864	1/0	t0001	796	171	29	13	104	2	22	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	t0002	798	5	0	1	4	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	t0003	796	1	0	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	t0004	796	1	0	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	t0005	796	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPLOC4_chr17_81551887_81642112	0/0	t0001	2555	24	3	10	2	1	8	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/1	t0002	2555	24	3	4	10	1	5	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0003	2555	20	1	2	14	1	2	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0004	2555	15	3	4	1	3	4	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0005	2555	13	2	9	2	0	0	copy fasta	NPLOC4	chr17	81551887	81642112