Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARNT2_chr15_80399382_80602933	0/0	t0029	4370	1	0	0	0	1	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0030	4370	1	0	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0031	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0032	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0033	4370	1	0	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0034	4370	1	0	0	0	0	1	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0035	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0036	4370	1	0	0	0	0	1	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0037	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0038	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0039	4370	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0040	4370	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0041	4370	1	0	1	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0042	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0043	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0044	4370	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0045	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0046	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0047	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0048	4370	1	0	0	0	0	1	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0049	4370	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0050	4370	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0051	4370	1	0	0	0	0	1	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0052	4370	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	t0053	4371	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT_chr1_150804713_150881599	0/1	t0001	2344	76	11	13	43	4	4	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0002	2346	44	5	14	19	0	6	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0003	2345	41	0	10	23	3	5	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0004	2345	22	22	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0005	2348	16	2	1	13	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0006	2346	14	0	0	14	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0007	2346	9	2	0	5	1	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	1/0	t0008	2341	9	8	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0009	2346	8	1	3	2	0	2	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0010	2345	7	0	2	2	0	3	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0011	2350	6	5	1	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0012	2343	6	3	2	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0013	2350	5	5	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0014	2344	4	0	0	4	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0015	2349	4	0	0	4	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0016	2345	4	0	1	1	1	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0017	2347	3	0	2	0	1	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0018	2344	3	3	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0019	2334	3	3	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0020	2350	3	1	0	0	2	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0021	2347	2	0	0	1	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0022	2345	2	0	0	1	1	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0023	2345	2	2	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0024	2342	2	0	2	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	t0025	2346	2	0	0	1	1	0	copy fasta	ARNT	chr1	150804713	150881599