JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPLOC4_chr17_81551887_81642112	0/0	t0006	2555	9	2	1	6	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0007	2555	8	0	3	5	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0008	2555	7	1	1	5	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0009	2555	7	0	0	5	0	2	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0010	2555	7	2	0	5	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0011	2555	6	0	0	6	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0012	2555	6	0	3	2	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0013	2555	6	2	0	4	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0014	2555	5	0	2	1	2	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0015	2555	5	0	0	5	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0016	2555	5	0	0	3	0	2	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0017	2555	5	0	0	5	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0018	2555	5	1	1	2	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0019	2555	4	2	1	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0020	2555	4	0	2	0	1	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0021	2555	4	0	1	0	2	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0022	2555	4	4	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0023	2555	4	1	1	1	1	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0024	2555	4	0	0	4	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0025	2555	3	1	2	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0026	2555	3	1	2	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0027	2555	3	0	0	3	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0028	2555	2	2	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0029	2555	2	0	1	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0030	2555	2	2	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0031	2555	2	0	0	2	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0032	2555	2	2	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	1/0	t0033	2555	2	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0034	2555	2	1	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0035	2555	2	2	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0036	2555	2	1	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0037	2555	2	0	2	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0038	2555	2	0	2	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0039	2556	2	2	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0040	2555	2	0	2	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0041	2555	2	2	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0042	2555	2	0	0	1	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0043	2555	2	0	0	2	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0044	2555	2	1	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0045	2555	2	0	0	0	0	2	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0046	2555	2	0	0	0	2	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0047	2555	2	1	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0048	2555	2	0	2	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0049	2555	2	0	2	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0050	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0051	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0052	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0053	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0054	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0055	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112