JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPLOC4_chr17_81551887_81642112	0/0	t0056	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0057	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0058	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0059	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0060	2555	1	0	0	0	1	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0061	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0062	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0063	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0064	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0065	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0066	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0067	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0068	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0069	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0070	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0071	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0072	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0073	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0074	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0075	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0076	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0077	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0078	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0079	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0080	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0081	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0082	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0083	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0084	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0085	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0086	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0087	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0088	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0089	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0090	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0091	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0092	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0093	2556	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0094	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0095	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0096	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0097	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0098	2556	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0099	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0100	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0101	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0102	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0103	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0104	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0105	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112