JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPLOC4_chr17_81551887_81642112	0/0	t0106	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0107	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0108	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0109	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0110	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0111	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0112	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0113	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0114	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0115	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0116	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0117	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0118	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0119	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0120	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0121	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0122	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0123	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0124	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0125	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0126	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0127	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0128	2555	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0129	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0130	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0131	2555	1	0	0	0	1	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0132	2555	1	0	0	0	0	1	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0133	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0134	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0135	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0136	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0137	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0138	2555	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	t0139	2555	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPL_chr1_182784773_182835384	1/1	t0001	1581	209	38	44	91	12	22	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0002	1581	61	19	4	33	1	4	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0003	1581	43	29	9	1	1	3	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0004	1581	5	5	0	0	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0005	1581	1	1	0	0	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0006	1581	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0007	1581	1	1	0	0	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0008	1581	1	0	0	0	0	1	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0009	1581	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0010	1581	1	1	0	0	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0011	1581	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	t0012	1581	1	0	1	0	0	0	copy fasta	NPL	chr1	182784773	182835384
NPM1_chr5_171382849_171415900	1/1	t0001	436	275	81	57	100	9	26	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	t0002	435	99	8	17	57	5	12	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	t0003	435	22	0	0	22	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	t0004	436	1	1	0	0	0	0	copy fasta	NPM1	chr5	171382849	171415900