JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPM1_chr5_171382849_171415900	0/0	t0005	436	1	0	0	1	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	t0006	436	1	1	0	0	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	t0007	435	1	0	0	1	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	t0008	436	1	1	0	0	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	t0009	435	1	0	0	1	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM2_chr8_22019134_22041897	1/1	t0001	846	364	69	70	180	16	27	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0002	846	39	3	9	14	0	13	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0003	846	17	17	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0004	846	3	3	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0005	846	3	3	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0006	846	2	0	0	0	0	2	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0007	846	2	0	0	2	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0008	846	1	1	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0009	846	1	1	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0010	846	1	1	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	t0011	846	1	0	1	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM3_chr10_101776325_101788446	1/1	t0001	374	356	77	65	159	18	35	copy fasta	NPM3	chr10	101776325	101788446
NPM3_chr10_101776325_101788446	0/0	t0002	374	8	7	1	0	0	0	copy fasta	NPM3	chr10	101776325	101788446
NPM3_chr10_101776325_101788446	0/0	t0003	374	6	6	0	0	0	0	copy fasta	NPM3	chr10	101776325	101788446
NPM3_chr10_101776325_101788446	0/0	t0004	359	1	0	0	0	0	1	copy fasta	NPM3	chr10	101776325	101788446
NPM3_chr10_101776325_101788446	0/0	t0005	374	1	0	0	1	0	0	copy fasta	NPM3	chr10	101776325	101788446
NPNT_chr4_105890471_105976671	0/0	t0001	2864	96	26	26	34	2	8	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0002	2864	93	44	10	17	8	14	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/1	t0003	2864	14	0	3	7	0	3	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	1/0	t0004	2864	8	2	3	0	1	1	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0005	2864	7	7	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0006	2864	5	0	3	0	1	1	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0007	2864	2	0	1	0	1	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0008	2864	2	0	0	0	0	2	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0009	2864	2	0	0	0	1	1	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0010	2864	2	2	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0011	2864	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0012	2864	1	0	0	1	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0013	2864	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0014	2864	1	0	0	1	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	t0015	2864	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPPA_chr1_11840709_11852783	1/1	t0001	400	291	41	58	139	14	37	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	t0002	400	59	47	5	2	3	2	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	t0003	400	7	2	0	1	1	3	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	t0004	389	6	0	1	1	0	4	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	t0005	400	3	0	0	3	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPB_chr1_11852464_11863945	1/1	t0001	304	254	33	44	140	11	24	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0002	305	79	25	22	9	7	16	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0003	305	34	3	5	23	0	3	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0004	307	24	16	1	5	0	2	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0005	302	5	1	0	1	0	3	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0006	311	5	5	0	0	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0007	316	4	4	0	0	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0008	305	3	0	0	3	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	t0009	304	1	0	0	1	0	0	copy fasta	NPPB	chr1	11852464	11863945