JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPPB_chr1_11852464_11863945	0/0	t0010	308	1	1	0	0	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPC_chr2_231916809_231931396	1/1	t0001	675	372	62	76	171	15	46	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0002	675	34	7	3	23	1	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0003	675	23	21	2	0	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0004	673	4	4	0	0	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0005	675	3	3	0	0	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0006	675	1	1	0	0	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0007	675	1	0	0	1	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0008	675	1	0	1	0	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	t0009	675	1	0	0	1	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPR1_chr1_153673688_153698992	0/0	t0001	999	147	18	31	78	6	14	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	1/1	t0002	1000	136	39	21	56	3	15	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0003	1001	32	19	4	3	1	5	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0004	990	7	3	0	2	0	2	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0005	1000	7	7	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0006	998	5	2	1	2	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0007	1003	4	2	1	0	1	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0008	1002	3	0	1	1	1	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0009	991	2	2	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0010	999	2	0	0	0	2	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	t0011	1000	1	0	1	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR2_chr9_35786591_35814731	1/0	t0001	1105	339	75	46	182	11	24	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/1	t0002	1105	59	3	27	14	1	13	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0003	1105	6	6	0	0	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0004	1106	5	2	0	3	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0005	1105	2	0	0	1	0	1	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0006	1105	1	1	0	0	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0007	1105	1	0	0	1	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0008	1105	1	0	0	1	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0009	1106	1	1	0	0	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	t0010	1105	1	0	1	0	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR3_chr5_32706321_32796720	0/0	t0001	5838	91	14	17	41	4	15	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0002	5838	49	7	4	28	3	7	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0003	5836	47	1	3	39	0	4	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0004	5838	18	8	5	0	1	4	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0005	5852	9	9	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0006	5838	6	5	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0007	5838	6	4	2	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0008	5853	5	5	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	1/0	t0009	5832	5	0	1	3	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/1	t0010	5836	4	0	3	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0011	5838	4	0	1	1	1	1	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0012	5838	4	0	4	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0013	5844	3	0	3	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0014	5838	2	0	2	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0015	5838	2	0	1	0	1	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0016	5844	2	0	2	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0017	5838	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0018	5838	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0019	5838	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720