JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPR3_chr5_32706321_32796720	0/0	t0020	5838	2	0	0	2	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0021	5838	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0022	5836	2	0	0	0	1	1	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0023	5852	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0024	5852	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0025	5839	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0026	5853	2	2	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0027	5832	2	1	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0028	5836	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0029	5838	1	0	0	0	0	1	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0030	5841	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0031	5842	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0032	5836	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0033	5838	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0034	5838	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0035	5838	1	0	0	0	0	1	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0036	5838	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0037	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0038	5838	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0039	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0040	5838	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0041	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0042	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0043	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0044	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0045	5838	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0046	5838	1	0	0	0	1	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0047	5838	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0048	5838	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0049	5838	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0050	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0051	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0052	5838	1	0	0	0	0	1	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0053	5836	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0054	5838	1	0	0	0	0	1	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0055	5838	1	0	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0056	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0057	5838	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0058	5838	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0059	5840	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0060	5852	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0061	5853	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0062	5852	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0063	5852	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0064	5839	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0065	5839	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0066	5837	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0067	5830	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	t0068	5830	1	0	0	1	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPRL2_chr3_50342330_50355775	1/0	t0001	400	143	40	32	49	5	16	copy fasta	NPRL2	chr3	50342330	50355775